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1

Deep learning using tumor HLA peptide mass spectrometry datasets improves neoantigen identification

Bulik-Sullivan, Brendan, Busby, Jennifer, Palmer, Christine D, Davis, Matthew J, Murphy, Tyler, Clark, Andrew, Busby, Michele, Duke, Fujiko, Yang, Aaron, Young, Lauren, Ojo, Noelle C, Caldwell, Kamila

Journal:

Nature Biotechnology

Year:

2018

Language:

english

File:

PDF, 1.08 MB

english, 2018

2

Characterizing Electro-osmotic Flow in Parylene Microchannels

Freire, Sergio L. S., Yang, Hao, Luk, Vivienne N., O'Brien, Brendan

Journal:

Polymer-Plastics Technology and Engineering

Year:

2011

Language:

english

File:

PDF, 345 KB

english, 2011

3

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

Bulik-Sullivan, Brendan K, Loh, Po-Ru, Finucane, Hilary K, Ripke, Stephan, Yang, Jian, Patterson, Nick, Daly, Mark J, Price, Alkes L, Neale, Benjamin M

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 593 KB

english, 2015

4

Nanophotonic particle simulation and inverse design using artificial neural networks

Peurifoy, John, Shen, Yichen, Jing, Li, Yang, Yi, Cano-Renteria, Fidel, DeLacy, Brendan G., Joannopoulos, John D., Tegmark, Max, Soljačić, Marin

Journal:

Science Advances

Year:

2018

Language:

english

File:

PDF, 393 KB

english, 2018

5

Identification of Allosteric PIF-Pocket Ligands for PDK1 using NMR-Based Fragment Screening and 1H-15N TROSY Experiments

Brian J. Stockman, Michael Kothe, Darcy Kohls, Laura Weibley, Brendan J. Connolly, Alissa L. Sheils, Qing Cao, Alan C. Cheng, Lily Yang, Ajith V. Kamath, Yuan-Hua Ding, Maura E. Charlton

Journal:

Chemical Biology & Drug Design

Year:

2009

Language:

english

File:

PDF, 566 KB

english, 2009

6

Monolithic Integration of Single Facet Slotted Laser, SOA, and MMI Coupler

Yang, Hua, Morrissey, Padraic, Cotter, William, Daunt, Chris L. M., O'Callaghan, James, Roycroft, Brendan, Ye, Nan, Kelly, Niall, Corbett, Brian, Peters, Frank H.

Journal:

IEEE Photonics Technology Letters

Year:

2013

Language:

english

File:

PDF, 485 KB

english, 2013

7

C2H2 zinc finger proteins greatly expand the human regulatory lexicon

Najafabadi, Hamed S, Mnaimneh, Sanie, Schmitges, Frank W, Garton, Michael, Lam, Kathy N, Yang, Ally, Albu, Mihai, Weirauch, Matthew T, Radovani, Ernest, Kim, Philip M, Greenblatt, Jack, Frey, Brendan

Journal:

Nature Biotechnology

Year:

2015

Language:

english

File:

PDF, 1.90 MB

english, 2015

8

Hotel revenue management: from theory to practice

Richard, Brendan, Shi, Wenbo, Yang, Conghui

Journal:

Year:

2015

Language:

english

File:

PDF, 453 KB

english, 2015

9

Transmission beam characteristics of a Risso's dolphin ( Grampus griseus )

Smith, Adam B., Kloepper, Laura N., Yang, Wei-Cheng, Huang, Wan-Hsiu, Jen, I-Fan, Rideout, Brendan P., Nachtigall, Paul E.

Journal:

The Journal of the Acoustical Society of America

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

10

Live acquisition of main memory data from Android smartphones and smartwatches

Yang, Seung Jei, Choi, Jung Ho, Kim, Ki Bom, Bhatia, Rohit, Saltaformaggio, Brendan, Xu, Dongyan

Journal:

Digital Investigation

Year:

2017

Language:

english

File:

PDF, 4.33 MB

english, 2017

11

The cell biology and molecular genetics of Müllerian duct development

Roly, Zahida Yesmin, Backhouse, Brendan, Cutting, Andrew, Tan, Tiong Yang, Sinclair, Andrew H., Ayers, Katie L., Major, Andrew T., Smith, Craig A.

Journal:

Wiley Interdisciplinary Reviews: Developmental Biology

Year:

2018

Language:

english

File:

PDF, 2.16 MB

english, 2018

12

Editorial: China’s Belt and Road Initiative

Cullinane, Kevin Patrick Brendan, Lee, Paul Tae-Woo, Yang, Zaili, Hu, Zhi-Hua

Journal:

Transportation Research Part E: Logistics and Transportation Review

Year:

2018

Language:

english

File:

PDF, 142 KB

english, 2018

13

Pushing the limits of excited-state g-factor measurements

Stuchbery, Andrew E., McCormick, Brendan P., Gray, Timothy J., Coombes, Ben J., Sun, Yang

Journal:

EPJ Web of Conferences

Year:

2018

Language:

english

File:

PDF, 275 KB

english, 2018

14

Growth of Lumbosacral Perineural (Tarlov) Cysts: A Natural History Analysis

Yang, Andrew I, Rinehart, Cole D, McShane, Brendan J, Hitti, Frederick L, Welch, William C

Journal:

Year:

2018

Language:

english

File:

PDF, 263 KB

english, 2018

15

Maintaining reading experience continuity across e-book revisions

Yang, Christopher, Flanagan, Brendan, Akcapinar, Gokhan, Ogata, Hiroaki

Journal:

Research and Practice in Technology Enhanced Learning

Year:

2018

Language:

english

File:

PDF, 1.21 MB

english, 2018

16

Quantifying the risk of insertion-related peritoneal dialysis catheter complications following laparoscopic placement: Results from the North American PD Catheter Registry

Oliver, Matthew J, Perl, Jeff, McQuillan, Rory, Blake, Peter G, Jain, Arsh K, McCormick, Brendan, Yang, Robert, Pirkle, James L, Fissell, Rachel B, Golper, Thomas A, Shen, Jenny I, Hu, Susie L, Pelleg

Journal:

Peritoneal Dialysis International

Year:

2020

Language:

english

File:

PDF, 241 KB

english, 2020

17

Does adding lateral pelvic lymph node dissection to neoadjuvant chemotherapy improve outcomes in low rectal cancer?

Law, Brendan Zhen Yang, Yusuf, Zeneera, Ng, Yu En, Aly, Emad H.

Journal:

International Journal of Colorectal Disease

Year:

2020

File:

PDF, 808 KB

2020

18

Osteosclerosis owing to Notch gain of function is solely Rbpj-dependent

Jianning Tao, Shan Chen, Tao Yang, Brian Dawson, Elda Munivez, Terry Bertin, Brendan Lee

Journal:

Journal of Bone and Mineral Research

Year:

2010

Language:

english

File:

PDF, 331 KB

english, 2010

19

Ten guiding principles for the delineation of priority habitat for endangered small cetaceans

Peter S. Ross, Jay Barlow, Thomas A. Jefferson, Brendan E. Hickie, Tatiana Lee, Christina MacFarquhar, E. Christien Parsons, Kimberly N. Riehl, Naomi A. Rose, Elisabeth Slooten, Chia-Yang Tsai, John Y

Journal:

Year:

2011

Language:

english

File:

PDF, 161 KB

english, 2011

20

Utilizing 5-aminolevulinic acid and pulsed dye laser for photodynamic therapy of oral leukoplakia – pilot study

Gal Shafirstein, Wolfgang Bäumler, Eric Sigel, Chun-Yang Fan, Kimberly Berry, Emre Vural, Brendan C Stack, James Y Suen

Journal:

Head & Neck Oncology

Year:

2010

Language:

english

File:

PDF, 128 KB

english, 2010

21

Reduction of oxygen catalyzed by nickel diphosphine complexes with positioned pendant amines

Yang, Jenny Y., Bullock, R. Morris, Dougherty, William G., Kassel, W. Scott, Twamley, Brendan, DuBois, Daniel L., Rakowski DuBois, M.

Journal:

Dalton Transactions

Year:

2010

Language:

english

File:

PDF, 546 KB

english, 2010

22

Functional Comparison of Mouse, Rat, and Fish Islet Grafts Transplanted into Diabetic Nude Mice

Hua Yang, Brendan C. Dickson, Wael O'Hali, Heather Kearns, James R. Wright Jr.

Journal:

General and Comparative Endocrinology

Year:

1997

Language:

english

File:

PDF, 84 KB

english, 1997

23

Streptozotocin Dose–Response Curve in Tilapia, a Glucose-Responsive Teleost Fish

James R. Wright Jr., Cherrie Abraham, Brendan C. Dickson, Hua Yang, Carol M. Morrison

Journal:

General and Comparative Endocrinology

Year:

1999

Language:

english

File:

PDF, 836 KB

english, 1999

24

Frequency of transient reductions in left ventricular ejection fraction at rest in coronary artery disease

Michael R. Freeman, Ling de Yang, Anatoly Langer, Brendan Foley, Paul W. Armstrong, Lois A. Adams

Journal:

The American Journal of Cardiology

Year:

1994

Language:

english

File:

PDF, 742 KB

english, 1994

25

Electrophysiological estimates of the time course of orthographic and metrical encoding in Chinese speech production

Qingfang Zhang, Brendan Stuart Weekes, Yufang Yang

Journal:

Brain and Language

Year:

2007

Language:

english

File:

PDF, 118 KB

english, 2007

26

TIPE2, a Negative Regulator of Innate and Adaptive Immunity that Maintains Immune Homeostasis

Honghong Sun, Shunyou Gong, Ruaidhri J. Carmody, Anja Hilliard, Li Li, Jing Sun, Li Kong, Lingyun Xu, Brendan Hilliard, Shimin Hu, Hao Shen, Xiaolu Yang, Youhai H. Chen

Journal:

Year:

2008

Language:

english

File:

PDF, 1.10 MB

english, 2008

27

The tumor biology and molecular characteristics of medulloblastoma identifying prognostic factors associated with survival outcomes and prognosis

Won Kim, Winward Choy, Justin Dye, Daniel Nagasawa, Michael Safaee, Brendan Fong, Isaac Yang

Journal:

Journal of Clinical Neuroscience

Year:

2011

Language:

english

File:

PDF, 815 KB

english, 2011

28

Clinical characteristics and diagnostic imaging of epidermoid tumors

Daniel Nagasawa, Andrew Yew, Michael Safaee, Brendan Fong, Quinton Gopen, Andrew T. Parsa, Isaac Yang

Journal:

Journal of Clinical Neuroscience

Year:

2011

Language:

english

File:

PDF, 168 KB

english, 2011

29

Hearing preservation after LINAC radiosurgery and LINAC radiotherapy for vestibular schwannoma

Brendan M. Fong, Patrick Pezeshkian, Daniel T. Nagasawa, Antonio De Salles, Quinton Gopen, Isaac Yang

Journal:

Journal of Clinical Neuroscience

Year:

2012

Language:

english

File:

PDF, 512 KB

english, 2012

30

Evaluation of the inferior and superior laryngeal nerve stumps for perineural spread in laryngeal cancer

Emre Vural, Chun-Yang Fan, Paul Spring, Brendan C. Stack Jr, Mimi S. Kokoska, Ehab Y. Hanna, James Y. Suen

Journal:

Otolaryngology - Head and Neck Surgery

Year:

2007

Language:

english

File:

PDF, 253 KB

english, 2007

31

Hydrogel encapsulation of the endothelial progenitor stem cell cytokine stromal cell derived factor-1alpha to facilitate sustained release therapy

John W. MacArthur, Brendan P. Purcell, Alexander S. Fairman, Alen Trubelja, Philip F. Hsiao, Elaine Yang, William Hiesinger, Pavan Atluri, Jason P. Burdick, Y. Joseph Woo

Journal:

Journal of the American College of Surgeons

Year:

2012

Language:

english

File:

PDF, 89 KB

english, 2012

32

Hydrogen production using cobalt-based molecular catalysts containing a proton relay in the second coordination sphere

Jacobsen, George M., Yang, Jenny Y., Twamley, Brendan, Wilson, Aaron D., Bullock, R. Morris, Rakowski DuBois, M., DuBois, Daniel L.

Journal:

Energy & Environmental Science

Year:

2008

Language:

english

File:

PDF, 682 KB

english, 2008

33

PIN-photodiode with a large spot size input waveguide

Wieczorek, Andreas, Yang, Hua, Roycroft, Brendan, Peters, Frank H., Corbett, Brian

Journal:

Optical and Quantum Electronics

Year:

2013

Language:

english

File:

PDF, 627 KB

english, 2013

34

Intraoperative neuromonitoring techniques in the surgical management of acoustic neuromas

Oh, Taemin, Nagasawa, Daniel T., Fong, Brendan M., Trang, Andy, Gopen, Quinton, Parsa, Andrew T., Yang, Isaac

Journal:

Neurosurgical FOCUS

Year:

2012

Language:

english

File:

PDF, 3.10 MB

english, 2012

35

SPIE Proceedings [SPIE OPTO - San Francisco, California (Saturday 23 January 2010)] Integrated Optics: Devices, Materials, and Technologies XIV - Quantum well intermixing in AlInGaAs MQW structures through impurity-free vacancy method

Lee, Ko-Hsin, O'Callaghan, James, Roycroft, Brendan, Daunt, Chris L. L. M., Yang, Hua, Song, Jeong Hwan, Peters, Frank H., Corbett, Brian, Broquin, Jean-Emmanuel, Greiner, Christoph M.

Year:

2010

Language:

english

File:

PDF, 437 KB

english, 2010

36

Mechanistic Insights into Catalytic H 2 Oxidation by Ni Complexes Containing a Diphosphine Ligand with a Positioned Amine Base

Yang, Jenny Y., Bullock, R. Morris, Shaw, Wendy J., Twamley, Brendan, Fraze, Kendra, DuBois, M. Rakowski, DuBois, Daniel L.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 1.15 MB

english, 2009

37

Genetic variance in Nitric Oxide Synthase and Endothelin Genes among children with and without Endothelial Dysfunction

Chatsuriyawong, Siriporn, Gozal, David, Kheirandish-Gozal, Leila, Bhattacharjee, Rakesh, Khalyfa, Ahamed A, Wang, Yang, Hakonarson, Hakon, Keating, Brendan, Sukhumsirichart, Wasana, Khalyfa, Abdelnaby

Journal:

Journal of Translational Medicine

Year:

2013

Language:

english

File:

PDF, 454 KB

english, 2013

38

A comparison of satellite- and ground-based measurements of SO 2 emissions from Tungurahua volcano, Ecuador

McCormick, Brendan T., Herzog, Michael, Yang, Jian, Edmonds, Marie, Mather, Tamsin A., Carn, Simon A., Hidalgo, Silvana, Langmann, Baerbel

Journal:

Journal of Geophysical Research Atmospheres

Year:

2014

Language:

english

File:

PDF, 5.80 MB

english, 2014

39

The role of regulatory T-cells in glioma immunology

Ooi, Yinn Cher, Tran, Patrick, Ung, Nolan, Thill, Kimberly, Trang, Andy, Fong, Brendan M., Nagasawa, Daniel T., Lim, Michael, Yang, Isaac

Journal:

Clinical Neurology and Neurosurgery

Year:

2014

Language:

english

File:

PDF, 1.84 MB

english, 2014

40

Comparison of in vitro tests at various levels of complexity for the prediction of in vivo performance of lipid-based formulations: Case studies with fenofibrate

Griffin, Brendan T., Kuentz, Martin, Vertzoni, Maria, Kostewicz, Edmund S., Fei, Yang, Faisal, Waleed, Stillhart, Cordula, O’Driscoll, Caitriona M., Reppas, Christos, Dressman, Jennifer B.

Journal:

European Journal of Pharmaceutics and Biopharmaceutics

Year:

2014

Language:

english

File:

PDF, 1.61 MB

english, 2014

41

Consensus Statement on the Terminology and Classification of Central Neck Dissection for Thyroid Cancer

Carty, Sally E., Cooper, David S., Doherty, Gerard M., Duh, Quan-Yang, Kloos, Richard T., Mandel, Susan J., Randolph, Gregory W., Stack, Brendan C., Steward, David L., Terris, David J., Thompson, Geof

Journal:

Year:

2009

Language:

english

File:

PDF, 392 KB

english, 2009

42

[IEEE 2012 24th International Conference on Indium Phosphide & Related Materials (IPRM) - Santa Barbara, CA, USA (2012.08.27-2012.08.30)] 2012 International Conference on Indium Phosphide and Related Materials - High speed AlInGaAs/InGaAs quantum well waveguide photodiode for wavelengths around 2 microns

Hua Yang,, Nan Ye,, Manganaro, Marina, Gocalinska, Agnieszka, Thomas, Kevin, Pelucchi, Emanuele, Roycroft, Brendan, Peters, Frank H., Corbett, Brian

Year:

2012

Language:

english

File:

PDF, 790 KB

english, 2012

43

The p400 ATPase regulates nucleosome stability and chromatin ubiquitination during DNA repair

Ye Xu, Yingli Sun, Xiaofeng Jiang, Marina K. Ayrapetov, Patryk Moskwa, Shenghong Yang, David M. Weinstock and Brendan D. Price

Journal:

The Journal of Cell Biology

Year:

2010

Language:

english

File:

PDF, 3.05 MB

english, 2010

44

Dimer monomer transition and dimer re-formation play important role for ATM cellular function during DNA repair

Du, Fengxia, Zhang, Minjie, Li, Xiaohua, Yang, Caiyun, Meng, Hao, Wang, Dong, Chang, Shuang, Xu, Ye, Price, Brendan, Sun, Yingli

Journal:

Biochemical and Biophysical Research Communications

Year:

2014

Language:

english

File:

PDF, 1.36 MB

english, 2014

45

Human somatic cell mutagenesis creates genetically tractable sarcomas

Molyneux, Sam D, Waterhouse, Paul D, Shelton, Dawne, Shao, Yang W, Watling, Christopher M, Tang, Qing-Lian, Harris, Isaac S, Dickson, Brendan C, Tharmapalan, Pirashaanthy, Sandve, Geir K, Zhang, Xiaoy

Journal:

Nature Genetics

Year:

2014

Language:

english

File:

PDF, 1.72 MB

english, 2014

46

Single-crystal-to-single-crystal structural transformations of two sandwich-like Cu(ii) pyrazolate complexes and their excellent catalytic performances in MMA polymerization

Li, Hong-Xi, Ren, Zhi-Gang, Liu, Dong, Chen, Yang, Lang, Jian-Ping, Cheng, Zhen-Ping, Zhu, Xiu-Lin, Abrahams, Brendan F.

Journal:

Chemical Communications

Year:

2010

Language:

english

File:

PDF, 1.18 MB

english, 2010

47

Site regions revisited: a climatic analysis of Hills' site regions for the province of Ontario using a parametric method

MacKey, Brendan G., McKenney, Daniel W., Yang, Yin-Qian, McMahon, June P., Hutchinson, Michael F.

Journal:

Canadian Journal of Forest Research

Year:

1996

Language:

english

File:

PDF, 1.04 MB

english, 1996

48

[IEEE Control (MSC) - Denver, CO, USA (2011.09.28-2011.09.30)] 2011 IEEE International Symposium on Computer-Aided Control System Design (CACSD) - Min-max approximate dynamic programming

O'Donoghue, Brendan, Wang, Yang, Boyd, Stephen

Year:

2011

Language:

english

File:

PDF, 168 KB

english, 2011

49

Activin A Promotes Hematopoietic Fated Mesoderm Development Through Upregulation of Brachyury in Human Embryonic Stem Cells

Cerdan, Chantal, McIntyre, Brendan A.S., Mechael, Rami, Levadoux-Martin, Marilyne, Yang, Jiabi, Lee, Jung Bok, Bhatia, Mickie

Journal:

Stem Cells and Development

Year:

2012

Language:

english

File:

PDF, 1.37 MB

english, 2012

50

[IEEE 2010 Photonics Global Conference - Orchard, Singapore (2010.12.14-2010.12.16)] 2010 Photonics Global Conference - Integration of low-pass filter with optical receiver using quantum well intermixing

Lee, Ko-Hsin, Daunt, Chris Ll. M., Roycroft, Brendan, O'Callaghan, James, Yang, Hua, Wieczorek, Andreas, Frank, H. Peters, Corbett, Brian

Year:

2010

Language:

english

File:

PDF, 489 KB

english, 2010